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About this Project
Who made this course?
Primer to image analysis
Frequently Asked Questions
What is napari?

Getting started with napari and plugins

Create a virtual environment and install napari

napari plugin installation workflow

Installing napari plugins

Cellpose-napari + FIJI

Classical segmentation with PartSeg

Allen Cell Segmenter

Site Navigation

About this Project
Who made this course?
Primer to image analysis
Frequently Asked Questions
What is napari?

Getting started with napari and plugins

Create a virtual environment and install napari

napari plugin installation workflow

Installing napari plugins

Cellpose-napari + FIJI

Classical segmentation with PartSeg

Allen Cell Segmenter

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napari Cell Segmentation Course

Preface

About this Project
Who made this course?
Primer to image analysis
Frequently Asked Questions

Onboarding to napari

What is napari?
Getting started with napari and plugins
Create a virtual environment and install napari
napari plugin installation workflow
Installing napari plugins

Segmentation Workflows

Cellpose-napari + FIJI
- Understanding and adjusting parameters
- Segmenting in napari and exporting a mask in FIJI
Classical segmentation with PartSeg
Allen Cell Segmenter
- Protocol for segmentation workflow
- Explanation of parameters and their effects

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By CZI Imaging Team

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Last updated on None.