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About this Project
Who made this course?
Primer to image analysis
Frequently Asked Questions
What is napari?
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Getting started with napari and plugins
Create a virtual environment and install napari
napari plugin installation workflow
Installing napari plugins
Cellpose-napari + FIJI
Classical segmentation with PartSeg
Allen Cell Segmenter
Closing
Site Navigation
About this Project
Who made this course?
Primer to image analysis
Frequently Asked Questions
What is napari?
More
Getting started with napari and plugins
Create a virtual environment and install napari
napari plugin installation workflow
Installing napari plugins
Cellpose-napari + FIJI
Classical segmentation with PartSeg
Allen Cell Segmenter
Closing
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+
K
napari Cell Segmentation Course
Preface
About this Project
Who made this course?
Primer to image analysis
Frequently Asked Questions
Onboarding to napari
What is napari?
Getting started with napari and plugins
Create a virtual environment and install napari
napari plugin installation workflow
Installing napari plugins
Segmentation Workflows
Cellpose-napari + FIJI
Understanding and adjusting parameters
Segmenting in napari and exporting a mask in FIJI
Classical segmentation with PartSeg
Segmentation of nuclei
Segmentation of foci
Quantification of segmented regions
Allen Cell Segmenter
Protocol for segmentation workflow
Explanation of parameters and their effects
Closing
Closing
repository
open issue
Index
