Analysis of single cell RNA-seq data

  • Introduction

  • 1. About the course
  • 2. Setup and installation
  • 3. Workflow overview
  • Data preprocessing

  • 4. Tabula muris
  • 5. Quality control
  • 6. Normalization and PCA
  • Data analysis

  • 7. Dimensionality reduction
  • 8. Clustering
  • 9. Differential expression
  • Exploratory analysis & advanced exercises

  • 10. Exploration with cellxgene
  • 11. Advanced exercises

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