Package index • cellxgene.census

Open/retrieve Census data

open_soma(): Open the Census

new_SOMATileDBContext_for_census(): Create SOMATileDBContext for Census

download_source_h5ad(): Download source H5AD to local file name.

get_source_h5ad_uri(): Locate source h5ad file for a dataset.

Export slices of data

get_seurat(): Export Census slices to Seurat

get_single_cell_experiment(): Export Census slices to SingleCellExperiment

Feature presence matrix

get_presence_matrix(): Read the feature dataset presence matrix.

Versioning of Census builds

get_census_version_description(): Get release description for a Census version

get_census_version_directory(): Get the directory of Census releases currently available

Census mirrors

get_census_mirror(): Get locator information about a Census mirror

get_census_mirror_directory(): Get the directory of Census mirrors currently available