Index

Symbols | D | F | T | V

Symbols

--obs
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
--open
- vcp-data-preview command line option
--organism-list
- vcp-benchmarks-run-cross-species_integration command line option, [1]
--organisms
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
--outdir
- vcp-data-download command line option
- vcp-data-search command line option
--output
- vcp-model-download command line option
--pred-effect-operation
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
--query
- vcp-data-download command line option
- vcp-data-summary command line option
--random-seed
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
--raw
- vcp-data-describe command line option
--sample-ids
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
--show-secrets
- vcp-config command line option
--skip-git
- vcp-model-init command line option
- vcp-model-submit command line option
--skip-packaging
- vcp-model-stage command line option
- vcp-model-submit command line option
--step
- vcp-model-assist command line option
--task-filter
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
--type
- vcp-cache-clear command line option
--use-gpu
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
--use-rep
- vcp-benchmarks-run-clustering command line option, [1]
--user-dataset
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
--user-runs
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
--username
- vcp-login command line option
--variant
- vcp-model-download command line option
--verbose
- vcp-benchmarks-system-check command line option
- vcp-cache-history command line option
- vcp-login command line option
- vcp-logout command line option
- vcp-model-download command line option
- vcp-model-init command line option
- vcp-model-list command line option
- vcp-model-stage command line option
- vcp-model-status command line option
- vcp-model-submit command line option
- vcp-model-validate-model-metadata command line option
--version
- vcp-cache-clean-uploads command line option
- vcp-model-download command line option
- vcp-model-stage command line option
--work-dir
- vcp-model-assist command line option
- vcp-model-init command line option
- vcp-model-stage command line option
- vcp-model-status command line option
- vcp-model-submit command line option
- vcp-model-validate-model-metadata command line option
--workflow-help
- vcp-model-init command line option
-B
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
-b
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
- vcp-benchmarks-run command line option, [1]
-c
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
- vcp-config command line option
- vcp-login command line option
- vcp-logout command line option
- vcp-model-assist command line option
- vcp-model-download command line option
- vcp-model-list command line option
- vcp-model-stage command line option
- vcp-model-status command line option
- vcp-model-submit command line option
- vcp-model-validate-model-metadata command line option
-d
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
-e
- vcp-data-download command line option
-f
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
- vcp-cache-clean-uploads command line option
- vcp-cache-clear command line option
- vcp-config command line option
- vcp-login command line option
-i
- vcp-config command line option
-l
- vcp-cache-history command line option
-m
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
- vcp-cache-clean-uploads command line option
-n
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
-o
- vcp-data-download command line option
- vcp-data-search command line option
-q
- vcp-data-download command line option
- vcp-data-summary command line option
-r
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
-t
- vcp-benchmarks-get command line option, [1]
- vcp-benchmarks-list command line option, [1]
- vcp-cache-clear command line option
-u
- vcp-benchmarks-run-batch_integration command line option, [1]
- vcp-benchmarks-run-clustering command line option, [1]
- vcp-benchmarks-run-cross-species_integration command line option, [1]
- vcp-benchmarks-run-cross-species_label_prediction command line option, [1]
- vcp-benchmarks-run-embedding command line option, [1]
- vcp-benchmarks-run-label_prediction command line option, [1]
- vcp-benchmarks-run-perturbation_expression_prediction command line option, [1]
- vcp-benchmarks-run-sequential_organization command line option, [1]
- vcp-login command line option
-v
- vcp-benchmarks-system-check command line option
- vcp-cache-clean-uploads command line option
- vcp-cache-history command line option
- vcp-login command line option
- vcp-logout command line option
- vcp-model-download command line option
- vcp-model-init command line option
- vcp-model-list command line option
- vcp-model-stage command line option
- vcp-model-status command line option
- vcp-model-submit command line option
- vcp-model-validate-model-metadata command line option

D

DATASET_ID

F

FIELD
- vcp-data-summary command line option

T

TERM
- vcp-data-search command line option

V

vcp-benchmarks-get command line option
- --benchmark-key, [1]
- --dataset-filter, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --model-filter, [1]
- --no-user-runs, [1]
- --task-filter, [1]
- --user-runs, [1]
- -b, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -t, [1]
vcp-benchmarks-list command line option
- --benchmark-key, [1]
- --dataset-filter, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --model-filter, [1]
- --no-user-runs, [1]
- --task-filter, [1]
- --user-runs, [1]
- -b, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -t, [1]
vcp-benchmarks-run command line option
- --benchmark-key, [1]
- -b, [1]
vcp-benchmarks-run-batch_integration command line option
- --baseline-n-pcs, [1]
- --baseline-n-top-genes, [1]
- --baseline-obsm-key, [1]
- --batch-labels, [1]
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --labels, [1]
- --model-key, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-run-clustering command line option
- --baseline-n-pcs, [1]
- --baseline-n-top-genes, [1]
- --baseline-obsm-key, [1]
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --flavor, [1]
- --format, [1]
- --full, [1]
- --input-labels, [1]
- --key-added, [1]
- --model-key, [1]
- --n-iterations, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --obs, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --use-rep, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-run-cross-species_integration command line option
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --labels, [1]
- --model-key, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --organism-list, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-run-cross-species_label_prediction command line option
- --aggregation-method, [1]
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --labels, [1]
- --model-key, [1]
- --n-folds, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --organisms, [1]
- --random-seed, [1]
- --sample-ids, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-run-embedding command line option
- --baseline-n-pcs, [1]
- --baseline-n-top-genes, [1]
- --baseline-obsm-key, [1]
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --input-labels, [1]
- --model-key, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-run-label_prediction command line option
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --labels, [1]
- --min-class-size, [1]
- --model-key, [1]
- --n-folds, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-run-perturbation_expression_prediction command line option
- --adata, [1]
- --cell-index, [1]
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --gene-index, [1]
- --model-key, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --pred-effect-operation, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]

vcp-benchmarks-run-sequential_organization command line option
- --adaptive-k, [1]
- --baseline-n-pcs, [1]
- --baseline-n-top-genes, [1]
- --baseline-obsm-key, [1]
- --cell-representation, [1]
- --compute-baseline, [1]
- --dataset-key, [1]
- --fit, [1]
- --format, [1]
- --full, [1]
- --input-labels, [1]
- --k, [1]
- --model-key, [1]
- --no-cache, [1]
- --no-use-gpu, [1]
- --normalize, [1]
- --obs, [1]
- --random-seed, [1]
- --use-gpu, [1]
- --user-dataset, [1]
- -B, [1]
- -c, [1]
- -d, [1]
- -f, [1]
- -m, [1]
- -n, [1]
- -r, [1]
- -u, [1]
vcp-benchmarks-system-check command line option
- --verbose
- -v
vcp-cache-clean-uploads command line option
- --force
- --model
- --version
- -f
- -m
- -v
vcp-cache-clear command line option
- --force
- --type
- -f
- -t
vcp-cache-history command line option
- --limit
- --verbose
- -l
- -v
vcp-config command line option
- --config
- --format
- --hide-secrets
- --init
- --show-secrets
- -c
- -f
- -i
vcp-data-credentials command line option
- DATASET_ID
vcp-data-describe command line option
- --full
- --raw
- DATASET_ID
vcp-data-download command line option
- --exact
- --id
- --outdir
- --query
- -e
- -o
- -q
vcp-data-preview command line option
- --open
- DATASET_ID
vcp-data-search command line option
- --all-versions
- --download
- --exact
- --full
- --latest-version
- --outdir
- -o
- TERM
vcp-data-summary command line option
- --all-versions
- --latest-version
- --query
- -q
- FIELD
vcp-login command line option
- --config
- --force
- --username
- --verbose
- -c
- -f
- -u
- -v
vcp-logout command line option
- --config
- --verbose
- -c
- -v
vcp-model-assist command line option
- --config
- --step
- --work-dir
- -c
vcp-model-download command line option
- --config
- --max-workers
- --model
- --output
- --variant
- --verbose
- --version
- -c
- -v
vcp-model-init command line option
- --data-file
- --debug
- --debug-file
- --interactive
- --iteration
- --license-type
- --model-name
- --model-version
- --skip-git
- --verbose
- --work-dir
- --workflow-help
- -v
vcp-model-list command line option
- --config
- --format
- --verbose
- -c
- -v
vcp-model-stage command line option
- --batch-upload
- --clean-state
- --config
- --data-path
- --interactive
- --max-retries
- --model
- --no-resume
- --skip-packaging
- --verbose
- --version
- --work-dir
- -c
- -v
vcp-model-status command line option
- --config
- --format
- --verbose
- --work-dir
- -c
- -v
vcp-model-submit command line option
- --config
- --skip-git
- --skip-packaging
- --verbose
- --work-dir
- -c
- -v
vcp-model-validate-model-metadata command line option
- --config
- --verbose
- --work-dir
- -c
- -v
vcp-version command line option
- --check