Installation Guide

Requirements

Saber runs on Python 3.10 and above on Linux or Windows with CUDA12.

Quick Installation

Saber is available on PyPI and can be installed using pip:

pip install saber-em

⚠️ Note By default, the GUI is not included in the base installation. To enable the graphical interface for manual annotation, install with:

pip install saber-em[gui]

Development Installation

If you want to contribute to saber or need the latest development version, you can install from source:

git clone https://github.com/chanzuckerberg/saber.git
cd saber
pip install -e .

Verification

To verify your installation, run:

python -c "import saber; print(saber.__version__)"

Next Steps

• Import Tomograms - Learn how to import your tomograms into a copick project.
• Quick Start Guide - Run your first 2D or 3D experiment.
• Learn the API - Integrate Saber into your Python workflows.