CryoET Data Portal | Documentation
CryoET Data Portal
Quick start
Python API
napari
Examples
Download Data using AWS CLI
Frequently Asked Questions
cryoet-data-portal
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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V
A
acceleration_voltage (cryoet_data_portal.TiltSeries attribute)
affiliation_address (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
affiliation_identifier (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
affiliation_name (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
affine_transformation_matrix (cryoet_data_portal.Tomogram attribute)
aligned_tiltseries_binning (cryoet_data_portal.TiltSeries attribute)
Annotation (class in cryoet_data_portal)
annotation (cryoet_data_portal.AnnotationAuthor attribute)
Annotation (cryoet_data_portal.AnnotationFile attribute)
annotation_id (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.AnnotationFile attribute)
annotation_method (cryoet_data_portal.Annotation attribute)
annotation_publication (cryoet_data_portal.Annotation attribute)
annotation_software (cryoet_data_portal.Annotation attribute)
AnnotationAuthor (class in cryoet_data_portal)
AnnotationFile (class in cryoet_data_portal)
annotations (cryoet_data_portal.TomogramVoxelSpacing attribute)
author_list_order (cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
authors (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.Dataset attribute)
B
binning_from_frames (cryoet_data_portal.TiltSeries attribute)
C
camera_manufacturer (cryoet_data_portal.TiltSeries attribute)
camera_model (cryoet_data_portal.TiltSeries attribute)
cell_component_id (cryoet_data_portal.Dataset attribute)
cell_component_name (cryoet_data_portal.Dataset attribute)
cell_name (cryoet_data_portal.Dataset attribute)
cell_strain_id (cryoet_data_portal.Dataset attribute)
cell_strain_name (cryoet_data_portal.Dataset attribute)
cell_type_id (cryoet_data_portal.Dataset attribute)
Client (class in cryoet_data_portal)
confidence_precision (cryoet_data_portal.Annotation attribute)
confidence_recall (cryoet_data_portal.Annotation attribute)
corresponding_author_status (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
ctf_corrected (cryoet_data_portal.Tomogram attribute)
D
data_acquisition_software (cryoet_data_portal.TiltSeries attribute)
Dataset (class in cryoet_data_portal)
dataset (cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.DatasetFunding attribute)
(cryoet_data_portal.Run attribute)
dataset_citations (cryoet_data_portal.Dataset attribute)
dataset_id (cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.DatasetFunding attribute)
(cryoet_data_portal.Run attribute)
dataset_publications (cryoet_data_portal.Dataset attribute)
DatasetAuthor (class in cryoet_data_portal)
DatasetFunding (class in cryoet_data_portal)
deposition_date (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.Dataset attribute)
deposition_id (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.Tomogram attribute)
description (cryoet_data_portal.Dataset attribute)
download() (cryoet_data_portal.Annotation method)
download_alignment_file() (cryoet_data_portal.TiltSeries method)
download_all_annotations() (cryoet_data_portal.Tomogram method)
download_angle_list() (cryoet_data_portal.TiltSeries method)
download_collection_metadata() (cryoet_data_portal.TiltSeries method)
download_everything() (cryoet_data_portal.Dataset method)
(cryoet_data_portal.Run method)
(cryoet_data_portal.TomogramVoxelSpacing method)
download_mrcfile() (cryoet_data_portal.TiltSeries method)
(cryoet_data_portal.Tomogram method)
download_omezarr() (cryoet_data_portal.TiltSeries method)
(cryoet_data_portal.Tomogram method)
E
email (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
F
fiducial_alignment_status (cryoet_data_portal.Tomogram attribute)
files (cryoet_data_portal.Annotation attribute)
find() (cryoet_data_portal.Annotation class method)
(cryoet_data_portal.AnnotationAuthor class method)
(cryoet_data_portal.AnnotationFile class method)
(cryoet_data_portal.Dataset class method)
(cryoet_data_portal.DatasetAuthor class method)
(cryoet_data_portal.DatasetFunding class method)
(cryoet_data_portal.Run class method)
(cryoet_data_portal.TiltSeries class method)
(cryoet_data_portal.Tomogram class method)
(cryoet_data_portal.TomogramAuthor class method)
(cryoet_data_portal.TomogramVoxelSpacing class method)
format (cryoet_data_portal.AnnotationFile attribute)
frames_count (cryoet_data_portal.TiltSeries attribute)
funding_agency_name (cryoet_data_portal.DatasetFunding attribute)
funding_sources (cryoet_data_portal.Dataset attribute)
G
get_by_id() (cryoet_data_portal.Annotation class method)
(cryoet_data_portal.AnnotationAuthor class method)
(cryoet_data_portal.AnnotationFile class method)
(cryoet_data_portal.Dataset class method)
(cryoet_data_portal.DatasetAuthor class method)
(cryoet_data_portal.DatasetFunding class method)
(cryoet_data_portal.Run class method)
(cryoet_data_portal.TiltSeries class method)
(cryoet_data_portal.Tomogram class method)
(cryoet_data_portal.TomogramAuthor class method)
(cryoet_data_portal.TomogramVoxelSpacing class method)
grant_id (cryoet_data_portal.DatasetFunding attribute)
grid_preparation (cryoet_data_portal.Dataset attribute)
ground_truth_status (cryoet_data_portal.Annotation attribute)
ground_truth_used (cryoet_data_portal.Annotation attribute)
H
https_alignment_file (cryoet_data_portal.TiltSeries attribute)
https_angle_list (cryoet_data_portal.TiltSeries attribute)
https_collection_metadata (cryoet_data_portal.TiltSeries attribute)
https_metadata_path (cryoet_data_portal.Annotation attribute)
https_mrc_bin1 (cryoet_data_portal.TiltSeries attribute)
https_mrc_scale0 (cryoet_data_portal.Tomogram attribute)
https_omezarr_dir (cryoet_data_portal.TiltSeries attribute)
(cryoet_data_portal.Tomogram attribute)
https_path (cryoet_data_portal.AnnotationFile attribute)
https_prefix (cryoet_data_portal.Dataset attribute)
(cryoet_data_portal.Run attribute)
(cryoet_data_portal.TomogramVoxelSpacing attribute)
I
id (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.AnnotationFile attribute)
(cryoet_data_portal.Dataset attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.DatasetFunding attribute)
(cryoet_data_portal.Run attribute)
(cryoet_data_portal.TiltSeries attribute)
(cryoet_data_portal.Tomogram attribute)
(cryoet_data_portal.TomogramAuthor attribute)
(cryoet_data_portal.TomogramVoxelSpacing attribute)
is_canonical (cryoet_data_portal.Tomogram attribute)
is_visualization_default (cryoet_data_portal.AnnotationFile attribute)
K
key_photo_thumbnail_url (cryoet_data_portal.Dataset attribute)
(cryoet_data_portal.Tomogram attribute)
key_photo_url (cryoet_data_portal.Dataset attribute)
(cryoet_data_portal.Tomogram attribute)
L
last_modified_date (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.Dataset attribute)
M
method_type (cryoet_data_portal.Annotation attribute)
microscope_additional_info (cryoet_data_portal.TiltSeries attribute)
microscope_energy_filter (cryoet_data_portal.TiltSeries attribute)
microscope_image_corrector (cryoet_data_portal.TiltSeries attribute)
microscope_manufacturer (cryoet_data_portal.TiltSeries attribute)
microscope_model (cryoet_data_portal.TiltSeries attribute)
microscope_phase_plate (cryoet_data_portal.TiltSeries attribute)
N
name (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.Run attribute)
(cryoet_data_portal.Tomogram attribute)
(cryoet_data_portal.TomogramAuthor attribute)
neuroglancer_config (cryoet_data_portal.Tomogram attribute)
O
object_count (cryoet_data_portal.Annotation attribute)
object_description (cryoet_data_portal.Annotation attribute)
object_id (cryoet_data_portal.Annotation attribute)
object_name (cryoet_data_portal.Annotation attribute)
object_state (cryoet_data_portal.Annotation attribute)
offset_x (cryoet_data_portal.Tomogram attribute)
offset_y (cryoet_data_portal.Tomogram attribute)
offset_z (cryoet_data_portal.Tomogram attribute)
orcid (cryoet_data_portal.AnnotationAuthor attribute)
(cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
organism_name (cryoet_data_portal.Dataset attribute)
organism_taxid (cryoet_data_portal.Dataset attribute)
other_setup (cryoet_data_portal.Dataset attribute)
P
pixel_spacing (cryoet_data_portal.TiltSeries attribute)
primary_annotator_status (cryoet_data_portal.AnnotationAuthor attribute)
primary_author_status (cryoet_data_portal.DatasetAuthor attribute)
(cryoet_data_portal.TomogramAuthor attribute)
processing (cryoet_data_portal.Tomogram attribute)
processing_software (cryoet_data_portal.Tomogram attribute)
R
reconstruction_method (cryoet_data_portal.Tomogram attribute)
reconstruction_software (cryoet_data_portal.Tomogram attribute)
related_database_entries (cryoet_data_portal.Dataset attribute)
related_database_links (cryoet_data_portal.Dataset attribute)
related_empiar_entry (cryoet_data_portal.TiltSeries attribute)
release_date (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.Dataset attribute)
Run (class in cryoet_data_portal)
run (cryoet_data_portal.TiltSeries attribute)
(cryoet_data_portal.TomogramVoxelSpacing attribute)
run_id (cryoet_data_portal.TiltSeries attribute)
(cryoet_data_portal.TomogramVoxelSpacing attribute)
runs (cryoet_data_portal.Dataset attribute)
S
s3_alignment_file (cryoet_data_portal.TiltSeries attribute)
s3_angle_list (cryoet_data_portal.TiltSeries attribute)
s3_collection_metadata (cryoet_data_portal.TiltSeries attribute)
s3_metadata_path (cryoet_data_portal.Annotation attribute)
s3_mrc_bin1 (cryoet_data_portal.TiltSeries attribute)
s3_mrc_scale0 (cryoet_data_portal.Tomogram attribute)
s3_omezarr_dir (cryoet_data_portal.TiltSeries attribute)
(cryoet_data_portal.Tomogram attribute)
s3_path (cryoet_data_portal.AnnotationFile attribute)
s3_prefix (cryoet_data_portal.Dataset attribute)
(cryoet_data_portal.Run attribute)
(cryoet_data_portal.TomogramVoxelSpacing attribute)
sample_preparation (cryoet_data_portal.Dataset attribute)
sample_type (cryoet_data_portal.Dataset attribute)
scale0_dimensions (cryoet_data_portal.Tomogram attribute)
scale1_dimensions (cryoet_data_portal.Tomogram attribute)
scale2_dimensions (cryoet_data_portal.Tomogram attribute)
shape_type (cryoet_data_portal.AnnotationFile attribute)
size_x (cryoet_data_portal.Tomogram attribute)
size_y (cryoet_data_portal.Tomogram attribute)
size_z (cryoet_data_portal.Tomogram attribute)
spherical_aberration_constant (cryoet_data_portal.TiltSeries attribute)
T
tilt_axis (cryoet_data_portal.TiltSeries attribute)
tilt_max (cryoet_data_portal.TiltSeries attribute)
tilt_min (cryoet_data_portal.TiltSeries attribute)
tilt_range (cryoet_data_portal.TiltSeries attribute)
tilt_series_quality (cryoet_data_portal.TiltSeries attribute)
tilt_step (cryoet_data_portal.TiltSeries attribute)
tilting_scheme (cryoet_data_portal.TiltSeries attribute)
TiltSeries (class in cryoet_data_portal)
tiltseries (cryoet_data_portal.Run attribute)
tissue_id (cryoet_data_portal.Dataset attribute)
tissue_name (cryoet_data_portal.Dataset attribute)
title (cryoet_data_portal.Dataset attribute)
to_dict() (cryoet_data_portal.Annotation method)
(cryoet_data_portal.AnnotationAuthor method)
(cryoet_data_portal.AnnotationFile method)
(cryoet_data_portal.Dataset method)
(cryoet_data_portal.DatasetAuthor method)
(cryoet_data_portal.DatasetFunding method)
(cryoet_data_portal.Run method)
(cryoet_data_portal.TiltSeries method)
(cryoet_data_portal.Tomogram method)
(cryoet_data_portal.TomogramAuthor method)
(cryoet_data_portal.TomogramVoxelSpacing method)
Tomogram (class in cryoet_data_portal)
tomogram (cryoet_data_portal.TomogramAuthor attribute)
tomogram_id (cryoet_data_portal.TomogramAuthor attribute)
tomogram_version (cryoet_data_portal.Tomogram attribute)
tomogram_voxel_spacing (cryoet_data_portal.Annotation attribute)
(cryoet_data_portal.Tomogram attribute)
tomogram_voxel_spacing_id (cryoet_data_portal.Annotation attribute)
tomogram_voxel_spacings (cryoet_data_portal.Run attribute)
TomogramAuthor (class in cryoet_data_portal)
tomograms (cryoet_data_portal.TomogramVoxelSpacing attribute)
TomogramVoxelSpacing (class in cryoet_data_portal)
total_flux (cryoet_data_portal.TiltSeries attribute)
type (cryoet_data_portal.Tomogram attribute)
V
voxel_spacing (cryoet_data_portal.Tomogram attribute)
(cryoet_data_portal.TomogramVoxelSpacing attribute)