cellxgene

An interactive explorer for single-cell transcriptomics data

Quick start
Installation
Gallery
Demo datasets
Preparing your data
Launching cellxgene
Hosting cellxgene
Annotating data
Methods
Troubleshooting
Roadmap
Contributing (ideas or code)
Contact & finding help
cellxgene.cziscience.com
Code

Features

Cross-filter cells and color by metadata

Compare groups of cells with differential expression

See how metadata and gene expression break down across categories

Find cells where a gene is expressed

Compare expression of multiple genes

Interactive demos

Several groups have independently deployed various versions of cellxgene to the web. Check out the cool data that our users are using cellxgene to explore!

Kidney cell atlas

Tabula muris senis

Hemocytes

Melanoma

CZI’s own cellxgene site

Want us to link to your dataset here? Just send us a note!