cellxgene

An interactive explorer for single-cell transcriptomics data

Quick start
Installation
Gallery
Cellxgene data portal
Demo datasets
Preparing your data
Launching cellxgene
Hosting cellxgene
Annotating data
Methods
Troubleshooting
Roadmap
Contributing (ideas or code)
Contact & finding help
Code

Example datasets

To use these datasets, run:
cellxgene launch [filename.h5ad] --open

Peripheral blood mononuclear cells

Healthy human PBMCs (10X).

Tabula muris

20 organs and tissues from healthy mice (Smart-Seq2).
Rich metadata and annotations.

Tabula muris senis

22 organs and tissues from healthy mice at ages 3mo, 18mo, 21mo, and 24mo (Smart-Seq2).
Rich metadata and annotations.