cellxgene

An interactive explorer for single-cell transcriptomics data

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cellxgene.cziscience.com
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cellxgene.cziscience.com

Chan Zuckerberg has an online repository of public single-cell datasets for exploration with cellxgene.

If you have a public dataset which you would like hosted for visualization on this site, with a link to embed on your own site, please drop us a note at cellxgene@chanzuckerberg.com.

cellxgene link More Information
Krasnow Lab Human Lung Cell Atlas, 10X Krasnow Lab, HLCA website
Krasnow Lab Human Lung Cell Atlas, Smart-seq2 Krasnow Lab, HLCA website
Human Cell Landscape Guo Lab, HCL website
Human fetal liver single cell transcriptome data E-MTAB-7407, covid19cellatlas.org
A cell atlas of human thymic development defines T cell repertoire formation E-MTAB-8581, covid19cellatlas.org
A cellular census of human lungs identifies novel cell states in health and in asthma - parenchyma asthma.cellgeni.sanger.ac.uk, covid19cellatlas.org
A cellular census of human lungs identifies novel cell states in health and in asthma - nasal asthma.cellgeni.sanger.ac.uk, covid19cellatlas.org
A cellular census of human lungs identifies novel cell states in health and in asthma - bronchi asthma.cellgeni.sanger.ac.uk, covid19cellatlas.org
Ischaemic sensitivity of human tissue by single cell RNA seq - lung HCA, covid19cellatlas.org
Ischaemic sensitivity of human tissue by single cell RNA seq - spleen HCA, covid19cellatlas.org
Ischaemic sensitivity of human tissue by single cell RNA seq - oesophagus HCA, covid19cellatlas.org
Spatio-temporal immune zonation of the human kidney www.kidneycellatlas.org, covid19cellatlas.org
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - 10x E-MTAB-6701, covid19cellatlas.org
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - SmartSeq2 E-MTAB-6701, covid19cellatlas.org
Gut Cell Atlas www.gutcellatlas.org, covid19cellatlas.org
A single-cell atlas of the peripheral immune response to severe COVID-19 Blish Lab, medRxiv preprint
Atlas of Healthy and SHIV-Infected Non-Human Primate Lung and Ileum ACE2+ Cells - Ileum Single Cell Portal
Atlas of Healthy and SHIV-Infected Non-Human Primate Lung and Ileum ACE2+ Cells - Lung Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - epithelial cells Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - nasal scrapings Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - surgical Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - nasal SSS Single Cell Portal
ACE2 and TMPRSS2 expression in human non-inflamed terminal ileum - epithelial cells Single Cell Portal
ACE2 and TMPRSS2 expression in human non-inflamed terminal ileum Single Cell Portal
Human Lung HIV-TB Co-infection ACE2+ Cells Single Cell Portal
Epithelial Cells in NHP mTB Granuloma and Uninvolved Lung Single Cell Portal
Selective Neuronal Vulnerability in Alzheimer's Disease Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Superior Frontal Gyrus Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Astrocytes in EC Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Excitatory Neurons in EC Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Inhibitory Neurons in EC Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Microglia in EC Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Astrocytes in SFG Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Excitatory Neurons in SFG Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Inhibitory Neurons in SFG Kampmann Lab, BioRxiv preprint
Selective Neuronal Vulnerability in Alzheimer's Disease: Microglia in SFG Kampmann Lab, BioRxiv preprint
Single-cell gene expression profiling of SARS-CoV-2 infected human cell lines - H1299 Landthaler Lab, BioRxiv preprint
Single-cell gene expression profiling of SARS-CoV-2 infected human cell lines - Calu-3 Landthaler Lab, BioRxiv preprint
Single-cell drug screening - A549 Trapnell Lab Github, Science
Single-cell drug screening - K562 Trapnell Lab Github, Science
Single-cell drug screening - MCF7 Trapnell Lab Github, Science
A molecular atlas of cell types and zonation in the brain vasculature Betsholtz Lab, Nature
Single Soma Transcriptomics - AT8 bioRxiv preprint
Single Soma Transcriptomics - MAP2 bioRxiv preprint
Single Soma Transcriptomics - MAP2AT8 bioRxiv preprint
Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cells bioRxiv preprint