cellxgene

An interactive explorer for single-cell transcriptomics data

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Hosting cellxgene
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cellxgene.cziscience.com
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cellxgene.cziscience.com

Chan Zuckerberg has an online repository of public single-cell datasets for exploration with cellxgene.

If you have a public dataset which you would like hosted for visualization on this site, with a link to embed on your own site, please drop us a note at cellxgene@chanzuckerberg.com.

cellxgene link More Information
Krasnow Lab Human Lung Cell Atlas, 10X Krasnow Lab, HLCA website
Krasnow Lab Human Lung Cell Atlas, Smart-seq2 Krasnow Lab, HLCA website
Human Cell Landscape Guo Lab, HCL website
Human fetal liver single cell transcriptome data E-MTAB-7407, covid19cellatlas.org
A cell atlas of human thymic development defines T cell repertoire formation E-MTAB-8581, covid19cellatlas.org
A cellular census of human lungs identifies novel cell states in health and in asthma - parenchyma asthma.cellgeni.sanger.ac.uk, covid19cellatlas.org
A cellular census of human lungs identifies novel cell states in health and in asthma - nasal asthma.cellgeni.sanger.ac.uk, covid19cellatlas.org
A cellular census of human lungs identifies novel cell states in health and in asthma - bronchi asthma.cellgeni.sanger.ac.uk, covid19cellatlas.org
Ischaemic sensitivity of human tissue by single cell RNA seq - lung HCA, covid19cellatlas.org
Ischaemic sensitivity of human tissue by single cell RNA seq - spleen HCA, covid19cellatlas.org
Ischaemic sensitivity of human tissue by single cell RNA seq - oesophagus HCA, covid19cellatlas.org
Spatio-temporal immune zonation of the human kidney www.kidneycellatlas.org, covid19cellatlas.org
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - 10x E-MTAB-6701, covid19cellatlas.org
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - SmartSeq2 E-MTAB-6701, covid19cellatlas.org
Gut Cell Atlas www.gutcellatlas.org, covid19cellatlas.org
A single-cell atlas of the peripheral immune response to severe COVID-19 Blish Lab, medRxiv preprint
Atlas of Healthy and SHIV-Infected Non-Human Primate Lung and Ileum ACE2+ Cells - Ileum Single Cell Portal
Atlas of Healthy and SHIV-Infected Non-Human Primate Lung and Ileum ACE2+ Cells - Lung Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - epithelial cells Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - nasal scrapings Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - surgical Single Cell Portal
Allergic inflammatory memory in human respiratory epithelial progenitor cells - nasal SSS Single Cell Portal
ACE2 and TMPRSS2 expression in human non-inflamed terminal ileum - epithelial cells Single Cell Portal
ACE2 and TMPRSS2 expression in human non-inflamed terminal ileum Single Cell Portal
Human Lung HIV-TB Co-infection ACE2+ Cells Single Cell Portal
Epithelial Cells in NHP mTB Granuloma and Uninvolved Lung Single Cell Portal