Whether you need to visualize one thousand cells or one million, cellxgene helps you gain insight into your single-cell data.
To install cellxgene you need Python 3.6+. We recommend installing cellxgene into a conda or virtual environment.
Install the package.
pip install cellxgene
Launch cellxgene with an example anndata file
cellxgene launch https://cellxgene-example-data.czi.technology/pbmc3k.h5ad
We’d love to hear from you!
For questions, suggestions, or accolades, join the
#cellxgene-users channel on the CZI Science Slack and say “hi!”.
For any errors, report bugs on Github.