cellxgene_ontology_guide.curated_ontology_term_lists 

 1import functools
 2import json
 3import os
 4from typing import List
 5
 6from cellxgene_ontology_guide._constants import DATA_ROOT
 7from cellxgene_ontology_guide.entities import CuratedOntologyTermList
 8
 9
10@functools.cache
11def get_curated_ontology_term_list(curated_ontology_term_list: CuratedOntologyTermList) -> List[str]:
12    """
13    Get the list of curated ontology terms for the given curated_ontology_term_list.
14
15    :param curated_ontology_term_list: Enum attribute representing the curated ontology term list
16    :return: List[str] of ontology term IDs
17    """
18    filename = f"{curated_ontology_term_list.value}_list.json"
19    with open(os.path.join(DATA_ROOT, filename)) as f:
20        return json.load(f)  # type: ignore
@functools.cache
def get_curated_ontology_term_list( curated_ontology_term_list: cellxgene_ontology_guide.entities.CuratedOntologyTermList) -> List[str]: 
11@functools.cache
12def get_curated_ontology_term_list(curated_ontology_term_list: CuratedOntologyTermList) -> List[str]:
13    """
14    Get the list of curated ontology terms for the given curated_ontology_term_list.
15
16    :param curated_ontology_term_list: Enum attribute representing the curated ontology term list
17    :return: List[str] of ontology term IDs
18    """
19    filename = f"{curated_ontology_term_list.value}_list.json"
20    with open(os.path.join(DATA_ROOT, filename)) as f:
21        return json.load(f)  # type: ignore

Get the list of curated ontology terms for the given curated_ontology_term_list.

Parameters
  • curated_ontology_term_list: Enum attribute representing the curated ontology term list
Returns

List[str] of ontology term IDs