{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Genes measured in each cell (dataset presence matrix)\n", "\n", "The Census is a compilation of cells from multiple datasets that may differ by the sets of genes they measure. This notebook describes the way to identify the genes measured per dataset.\n", "\n", "The presence matrix is a sparse boolean array, indicating which features (var) were present in each dataset. The array has dimensions [n_datasets, n_var], and is stored in the SOMA Measurement `varp` collection. The first dimension is indexed by the `soma_joinid` in the `census_datasets` dataframe. The second is indexed by the `soma_joinid` in the `var` dataframe of the measurement.\n", "\n", "As a reminder the `obs` data frame has a column `dataset_id` that can be used to link any cell in the Census to the presence matrix.\n", "\n", "**Contents** \n", "\n", "1. Opening the Census.\n", "2. Fetching the IDs of the Census datasets.\n", "3. Fetching the dataset presence matrix.\n", "4. Identifying genes measured in a specific dataset.\n", "5. Identifying datasets that measured specific genes.\n", "6. Identifying all genes measured in a dataset.\n", "\n", "⚠️ Note that the Census RNA data includes duplicate cells present across multiple datasets. Duplicate cells can be filtered in or out using the cell metadata variable `is_primary_data` which is described in the [Census schema](https://github.com/chanzuckerberg/cellxgene-census/blob/main/docs/cellxgene_census_schema.md#repeated-data).\n", "\n", "## Opening the Census\n", "\n", "The `cellxgene_census` python package contains a convenient API to open the latest version of the Census." ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "execution": { "iopub.execute_input": "2023-07-28T14:31:42.113710Z", "iopub.status.busy": "2023-07-28T14:31:42.113383Z", "iopub.status.idle": "2023-07-28T14:31:44.521274Z", "shell.execute_reply": "2023-07-28T14:31:44.520660Z" } }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "The \"stable\" release is currently 2023-07-25. Specify 'census_version=\"2023-07-25\"' in future calls to open_soma() to ensure data consistency.\n" ] } ], "source": [ "import cellxgene_census\n", "\n", "census = cellxgene_census.open_soma()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Fetching the IDs of the Census datasets\n", "\n", "Let's grab a table of all the datasets included in the Census and use this table in combination with the presence matrix below." ] }, { "cell_type": "code", "execution_count": 2, "metadata": { "execution": { "iopub.execute_input": "2023-07-28T14:31:44.524333Z", "iopub.status.busy": "2023-07-28T14:31:44.523881Z", "iopub.status.idle": "2023-07-28T14:31:45.361846Z", "shell.execute_reply": "2023-07-28T14:31:45.361322Z" } }, "outputs": [ { "data": { "text/html": [ "
\n", " | soma_joinid | \n", "collection_id | \n", "collection_name | \n", "collection_doi | \n", "dataset_id | \n", "dataset_title | \n", "dataset_h5ad_path | \n", "dataset_total_cell_count | \n", "
---|---|---|---|---|---|---|---|---|
0 | \n", "0 | \n", "e2c257e7-6f79-487c-b81c-39451cd4ab3c | \n", "Spatial multiomics map of trophoblast developm... | \n", "10.1038/s41586-023-05869-0 | \n", "f171db61-e57e-4535-a06a-35d8b6ef8f2b | \n", "donor_p13_trophoblasts | \n", "f171db61-e57e-4535-a06a-35d8b6ef8f2b.h5ad | \n", "31497 | \n", "
1 | \n", "1 | \n", "e2c257e7-6f79-487c-b81c-39451cd4ab3c | \n", "Spatial multiomics map of trophoblast developm... | \n", "10.1038/s41586-023-05869-0 | \n", "ecf2e08e-2032-4a9e-b466-b65b395f4a02 | \n", "All donors trophoblasts | \n", "ecf2e08e-2032-4a9e-b466-b65b395f4a02.h5ad | \n", "67070 | \n", "
2 | \n", "2 | \n", "e2c257e7-6f79-487c-b81c-39451cd4ab3c | \n", "Spatial multiomics map of trophoblast developm... | \n", "10.1038/s41586-023-05869-0 | \n", "74cff64f-9da9-4b2a-9b3b-8a04a1598040 | \n", "All donors all cell states (in vivo) | \n", "74cff64f-9da9-4b2a-9b3b-8a04a1598040.h5ad | \n", "286326 | \n", "
3 | \n", "3 | \n", "f7cecffa-00b4-4560-a29a-8ad626b8ee08 | \n", "Mapping single-cell transcriptomes in the intr... | \n", "10.1016/j.ccell.2022.11.001 | \n", "5af90777-6760-4003-9dba-8f945fec6fdf | \n", "Single-cell transcriptomic datasets of Renal c... | \n", "5af90777-6760-4003-9dba-8f945fec6fdf.h5ad | \n", "270855 | \n", "
4 | \n", "4 | \n", "3f50314f-bdc9-40c6-8e4a-b0901ebfbe4c | \n", "Single-cell sequencing links multiregional imm... | \n", "10.1016/j.ccell.2021.03.007 | \n", "bd65a70f-b274-4133-b9dd-0d1431b6af34 | \n", "Single-cell sequencing links multiregional imm... | \n", "bd65a70f-b274-4133-b9dd-0d1431b6af34.h5ad | \n", "167283 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
588 | \n", "588 | \n", "180bff9c-c8a5-4539-b13b-ddbc00d643e6 | \n", "Molecular characterization of selectively vuln... | \n", "10.1038/s41593-020-00764-7 | \n", "f9ad5649-f372-43e1-a3a8-423383e5a8a2 | \n", "Molecular characterization of selectively vuln... | \n", "f9ad5649-f372-43e1-a3a8-423383e5a8a2.h5ad | \n", "8168 | \n", "
589 | \n", "589 | \n", "a72afd53-ab92-4511-88da-252fb0e26b9a | \n", "Single-cell atlas of peripheral immune respons... | \n", "10.1038/s41591-020-0944-y | \n", "456e8b9b-f872-488b-871d-94534090a865 | \n", "Single-cell atlas of peripheral immune respons... | \n", "456e8b9b-f872-488b-871d-94534090a865.h5ad | \n", "44721 | \n", "
590 | \n", "590 | \n", "38833785-fac5-48fd-944a-0f62a4c23ed1 | \n", "Construction of a human cell landscape at sing... | \n", "10.1038/s41586-020-2157-4 | \n", "2adb1f8a-a6b1-4909-8ee8-484814e2d4bf | \n", "Construction of a human cell landscape at sing... | \n", "2adb1f8a-a6b1-4909-8ee8-484814e2d4bf.h5ad | \n", "598266 | \n", "
591 | \n", "591 | \n", "5d445965-6f1a-4b68-ba3a-b8f765155d3a | \n", "A molecular cell atlas of the human lung from ... | \n", "10.1038/s41586-020-2922-4 | \n", "e04daea4-4412-45b5-989e-76a9be070a89 | \n", "Krasnow Lab Human Lung Cell Atlas, Smart-seq2 | \n", "e04daea4-4412-45b5-989e-76a9be070a89.h5ad | \n", "9409 | \n", "
592 | \n", "592 | \n", "5d445965-6f1a-4b68-ba3a-b8f765155d3a | \n", "A molecular cell atlas of the human lung from ... | \n", "10.1038/s41586-020-2922-4 | \n", "8c42cfd0-0b0a-46d5-910c-fc833d83c45e | \n", "Krasnow Lab Human Lung Cell Atlas, 10X | \n", "8c42cfd0-0b0a-46d5-910c-fc833d83c45e.h5ad | \n", "65662 | \n", "
593 rows × 8 columns
\n", "\n", " | soma_joinid | \n", "feature_id | \n", "feature_name | \n", "feature_length | \n", "
---|---|---|---|---|
0 | \n", "0 | \n", "ENSG00000121410 | \n", "A1BG | \n", "3999 | \n", "
1 | \n", "1 | \n", "ENSG00000268895 | \n", "A1BG-AS1 | \n", "3374 | \n", "
2 | \n", "2 | \n", "ENSG00000148584 | \n", "A1CF | \n", "9603 | \n", "
3 | \n", "3 | \n", "ENSG00000175899 | \n", "A2M | \n", "6318 | \n", "
4 | \n", "4 | \n", "ENSG00000245105 | \n", "A2M-AS1 | \n", "2948 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
60659 | \n", "60659 | \n", "ENSG00000288719 | \n", "RP4-669P10.21 | \n", "4252 | \n", "
60660 | \n", "60660 | \n", "ENSG00000288720 | \n", "RP11-852E15.3 | \n", "7007 | \n", "
60661 | \n", "60661 | \n", "ENSG00000288721 | \n", "RP5-973N23.5 | \n", "7765 | \n", "
60662 | \n", "60662 | \n", "ENSG00000288723 | \n", "RP11-553N16.6 | \n", "1015 | \n", "
60663 | \n", "60663 | \n", "ENSG00000288724 | \n", "RP13-546I2.2 | \n", "625 | \n", "
60664 rows × 4 columns
\n", "\n", " | soma_joinid | \n", "collection_id | \n", "collection_name | \n", "collection_doi | \n", "dataset_id | \n", "dataset_title | \n", "dataset_h5ad_path | \n", "dataset_total_cell_count | \n", "
---|---|---|---|---|---|---|---|---|
5 | \n", "5 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "ff45e623-7f5f-46e3-b47d-56be0341f66b | \n", "Tabula Sapiens - Pancreas | \n", "ff45e623-7f5f-46e3-b47d-56be0341f66b.h5ad | \n", "13497 | \n", "
6 | \n", "6 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "f01bdd17-4902-40f5-86e3-240d66dd2587 | \n", "Tabula Sapiens - Salivary_Gland | \n", "f01bdd17-4902-40f5-86e3-240d66dd2587.h5ad | \n", "27199 | \n", "
7 | \n", "7 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "e6a11140-2545-46bc-929e-da243eed2cae | \n", "Tabula Sapiens - Heart | \n", "e6a11140-2545-46bc-929e-da243eed2cae.h5ad | \n", "11505 | \n", "
8 | \n", "8 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "e5c63d94-593c-4338-a489-e1048599e751 | \n", "Tabula Sapiens - Bladder | \n", "e5c63d94-593c-4338-a489-e1048599e751.h5ad | \n", "24583 | \n", "
9 | \n", "9 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "d8732da6-8d1d-42d9-b625-f2416c30054b | \n", "Tabula Sapiens - Trachea | \n", "d8732da6-8d1d-42d9-b625-f2416c30054b.h5ad | \n", "9522 | \n", "
11 | \n", "11 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "cee11228-9f0b-4e57-afe2-cfe15ee56312 | \n", "Tabula Sapiens - Spleen | \n", "cee11228-9f0b-4e57-afe2-cfe15ee56312.h5ad | \n", "34004 | \n", "
12 | \n", "12 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "a357414d-2042-4eb5-95f0-c58604a18bdd | \n", "Tabula Sapiens - Small_Intestine | \n", "a357414d-2042-4eb5-95f0-c58604a18bdd.h5ad | \n", "12467 | \n", "
14 | \n", "14 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "a0754256-f44b-4c4a-962c-a552e47d3fdc | \n", "Tabula Sapiens - Eye | \n", "a0754256-f44b-4c4a-962c-a552e47d3fdc.h5ad | \n", "10650 | \n", "
15 | \n", "15 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "983d5ec9-40e8-4512-9e65-a572a9c486cb | \n", "Tabula Sapiens - Blood | \n", "983d5ec9-40e8-4512-9e65-a572a9c486cb.h5ad | \n", "50115 | \n", "
19 | \n", "19 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "5e5e7a2f-8f1c-42ac-90dc-b4f80f38e84c | \n", "Tabula Sapiens - Fat | \n", "5e5e7a2f-8f1c-42ac-90dc-b4f80f38e84c.h5ad | \n", "20263 | \n", "
20 | \n", "20 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "55cf0ea3-9d2b-4294-871e-bb4b49a79fc7 | \n", "Tabula Sapiens - Tongue | \n", "55cf0ea3-9d2b-4294-871e-bb4b49a79fc7.h5ad | \n", "15020 | \n", "
21 | \n", "21 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "4f1555bc-4664-46c3-a606-78d34dd10d92 | \n", "Tabula Sapiens - Bone_Marrow | \n", "4f1555bc-4664-46c3-a606-78d34dd10d92.h5ad | \n", "12297 | \n", "
23 | \n", "23 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "2423ce2c-3149-4cca-a2ff-cf682ea29b5f | \n", "Tabula Sapiens - Kidney | \n", "2423ce2c-3149-4cca-a2ff-cf682ea29b5f.h5ad | \n", "9641 | \n", "
24 | \n", "24 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "1c9eb291-6d31-47e1-96b2-129b5e1ae64f | \n", "Tabula Sapiens - Muscle | \n", "1c9eb291-6d31-47e1-96b2-129b5e1ae64f.h5ad | \n", "30746 | \n", "
25 | \n", "25 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "18eb630b-a754-4111-8cd4-c24ec80aa5ec | \n", "Tabula Sapiens - Lymph_Node | \n", "18eb630b-a754-4111-8cd4-c24ec80aa5ec.h5ad | \n", "53275 | \n", "
26 | \n", "26 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "0d2ee4ac-05ee-40b2-afb6-ebb584caa867 | \n", "Tabula Sapiens - Lung | \n", "0d2ee4ac-05ee-40b2-afb6-ebb584caa867.h5ad | \n", "35682 | \n", "
27 | \n", "27 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "0ced5e76-6040-47ff-8a72-93847965afc0 | \n", "Tabula Sapiens - Thymus | \n", "0ced5e76-6040-47ff-8a72-93847965afc0.h5ad | \n", "33664 | \n", "
43 | \n", "43 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "8e10f1c4-8e98-41e5-b65f-8cd89a887122 | \n", "All neurons | \n", "8e10f1c4-8e98-41e5-b65f-8cd89a887122.h5ad | \n", "2480956 | \n", "
139 | \n", "139 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "fe1a73ab-a203-45fd-84e9-0f7fd19efcbd | \n", "Dissection: Amygdaloid complex (AMY) - basolat... | \n", "fe1a73ab-a203-45fd-84e9-0f7fd19efcbd.h5ad | \n", "35285 | \n", "
143 | \n", "143 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "f8dda921-5fb4-4c94-a654-c6fc346bfd6d | \n", "Dissection: Cerebral cortex (Cx) - Occipitotem... | \n", "f8dda921-5fb4-4c94-a654-c6fc346bfd6d.h5ad | \n", "31899 | \n", "
160 | \n", "160 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "dd03ce70-3243-4c96-9561-330cc461e4d7 | \n", "Dissection: Cerebral cortex (Cx) - Perirhinal ... | \n", "dd03ce70-3243-4c96-9561-330cc461e4d7.h5ad | \n", "23732 | \n", "
165 | \n", "165 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "d2b5efc1-14c6-4b5f-bd98-40f9084872d7 | \n", "Dissection: Tail of Hippocampus (HiT) - Caudal... | \n", "d2b5efc1-14c6-4b5f-bd98-40f9084872d7.h5ad | \n", "36886 | \n", "
175 | \n", "175 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "c4b03352-af8d-492a-8d6b-40f304e0a122 | \n", "Supercluster: Medium spiny neuron | \n", "c4b03352-af8d-492a-8d6b-40f304e0a122.h5ad | \n", "152189 | \n", "
176 | \n", "176 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "c2aad8fc-b63b-4f9b-9cfd-baf7bc9c1771 | \n", "Dissection: Cerebral cortex (Cx) - Temporal po... | \n", "c2aad8fc-b63b-4f9b-9cfd-baf7bc9c1771.h5ad | \n", "37642 | \n", "
177 | \n", "177 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "c202b243-1aa1-4b16-bc9a-b36241f3b1e3 | \n", "Supercluster: Amygdala excitatory | \n", "c202b243-1aa1-4b16-bc9a-b36241f3b1e3.h5ad | \n", "109452 | \n", "
178 | \n", "178 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "bdb26abd-f4ba-4ea3-8862-c2340e7a4f55 | \n", "Supercluster: CGE interneuron | \n", "bdb26abd-f4ba-4ea3-8862-c2340e7a4f55.h5ad | \n", "227671 | \n", "
183 | \n", "183 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "acae7679-d077-461c-b857-ee6ccfeb267f | \n", "Dissection: Head of hippocampus (HiH) - CA1 | \n", "acae7679-d077-461c-b857-ee6ccfeb267f.h5ad | \n", "39147 | \n", "
196 | \n", "196 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "9372df2d-13d6-4fac-980b-919a5b7eb483 | \n", "Dissection: Midbrain (M) - Periaqueductal gray... | \n", "9372df2d-13d6-4fac-980b-919a5b7eb483.h5ad | \n", "33794 | \n", "
197 | \n", "197 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "93131426-0124-4ab4-a013-9dfbcd99d467 | \n", "Dissection: Epithalamus - ETH | \n", "93131426-0124-4ab4-a013-9dfbcd99d467.h5ad | \n", "24327 | \n", "
206 | \n", "206 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "7c1c3d47-3166-43e5-9a95-65ceb2d45f78 | \n", "Dissection: Pons (Pn) - Pontine reticular form... | \n", "7c1c3d47-3166-43e5-9a95-65ceb2d45f78.h5ad | \n", "49512 | \n", "
208 | \n", "208 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "7a0a8891-9a22-4549-a55b-c2aca23c3a2a | \n", "Supercluster: Hippocampal CA1-3 | \n", "7a0a8891-9a22-4549-a55b-c2aca23c3a2a.h5ad | \n", "74979 | \n", "
220 | \n", "220 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "5e5ab909-f73f-4b57-98a0-6d2c5662f6a4 | \n", "Dissection: Midbrain (M) - Inferior colliculus... | \n", "5e5ab909-f73f-4b57-98a0-6d2c5662f6a4.h5ad | \n", "32306 | \n", "
243 | \n", "243 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "3f56901c-dd4a-47d6-b60b-7b0c0111cfb2 | \n", "Dissection: Head of hippocampus (HiH) - CA1-3 | \n", "3f56901c-dd4a-47d6-b60b-7b0c0111cfb2.h5ad | \n", "37911 | \n", "
245 | \n", "245 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "3a7f3ab4-a280-4b3b-b2c0-6dd05614a78c | \n", "Supercluster: Splatter | \n", "3a7f3ab4-a280-4b3b-b2c0-6dd05614a78c.h5ad | \n", "291833 | \n", "
249 | \n", "249 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "35c8a04c-8639-4d15-8228-765d8d93fc96 | \n", "Dissection: Hypothalamus (HTH) - supraoptic re... | \n", "35c8a04c-8639-4d15-8228-765d8d93fc96.h5ad | \n", "16753 | \n", "
270 | \n", "270 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "07b1d7c8-5c2e-42f7-9246-26f746cd6013 | \n", "Dissection: Myelencephalon (medulla oblongata)... | \n", "07b1d7c8-5c2e-42f7-9246-26f746cd6013.h5ad | \n", "27210 | \n", "
273 | \n", "273 | \n", "283d65eb-dd53-496d-adb7-7570c7caa443 | \n", "Transcriptomic diversity of cell types across ... | \n", "10.1101/2022.10.12.511898 | \n", "0325478a-9b52-45b5-b40a-2e2ab0d72eb1 | \n", "Supercluster: Upper-layer intratelencephalic | \n", "0325478a-9b52-45b5-b40a-2e2ab0d72eb1.h5ad | \n", "455006 | \n", "
475 | \n", "475 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "53d208b0-2cfd-4366-9866-c3c6114081bc | \n", "Tabula Sapiens - All Cells | \n", "53d208b0-2cfd-4366-9866-c3c6114081bc.h5ad | \n", "483152 | \n", "
476 | \n", "476 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "a68b64d8-aee3-4947-81b7-36b8fe5a44d2 | \n", "Tabula Sapiens - Stromal | \n", "a68b64d8-aee3-4947-81b7-36b8fe5a44d2.h5ad | \n", "82478 | \n", "
477 | \n", "477 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "c5d88abe-f23a-45fa-a534-788985e93dad | \n", "Tabula Sapiens - Immune | \n", "c5d88abe-f23a-45fa-a534-788985e93dad.h5ad | \n", "264824 | \n", "
478 | \n", "478 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "5a11f879-d1ef-458a-910c-9b0bdfca5ebf | \n", "Tabula Sapiens - Endothelial | \n", "5a11f879-d1ef-458a-910c-9b0bdfca5ebf.h5ad | \n", "31691 | \n", "
479 | \n", "479 | \n", "e5f58829-1a66-40b5-a624-9046778e74f5 | \n", "Tabula Sapiens | \n", "10.1126/science.abl4896 | \n", "97a17473-e2b1-4f31-a544-44a60773e2dd | \n", "Tabula Sapiens - Epithelial | \n", "97a17473-e2b1-4f31-a544-44a60773e2dd.h5ad | \n", "104148 | \n", "
\n", " | soma_joinid | \n", "feature_id | \n", "feature_name | \n", "feature_length | \n", "
---|---|---|---|---|
0 | \n", "0 | \n", "ENSG00000121410 | \n", "A1BG | \n", "3999 | \n", "
1 | \n", "1 | \n", "ENSG00000268895 | \n", "A1BG-AS1 | \n", "3374 | \n", "
2 | \n", "2 | \n", "ENSG00000148584 | \n", "A1CF | \n", "9603 | \n", "
3 | \n", "3 | \n", "ENSG00000175899 | \n", "A2M | \n", "6318 | \n", "
4 | \n", "4 | \n", "ENSG00000245105 | \n", "A2M-AS1 | \n", "2948 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
58109 | \n", "58109 | \n", "ENSG00000277745 | \n", "H2AB3 | \n", "591 | \n", "
58354 | \n", "58354 | \n", "ENSG00000233522 | \n", "FAM224A | \n", "2031 | \n", "
58411 | \n", "58411 | \n", "ENSG00000183146 | \n", "PRORY | \n", "878 | \n", "
58523 | \n", "58523 | \n", "ENSG00000279274 | \n", "RP11-533E23.2 | \n", "75 | \n", "
58632 | \n", "58632 | \n", "ENSG00000277836 | \n", "ENSG00000277836.1 | \n", "288 | \n", "
27211 rows × 4 columns
\n", "